Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lspi_1111Alpha/beta hydrolase family protein. (753 aa)    
Predicted Functional Partners:
pta
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
  
 0.868
Lspi_2181
Patatin-like phospholipase.
  
     0.680
phbC_2
Polyhydroxyalkanoic synthase.
 
     0.538
phbC_1
Polyhydroxyalkanoic synthase.
 
     0.536
Lspi_1112
Choloylglycine hydrolase.
       0.516
ack
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
    0.504
Lspi_1110
Hypothetical protein.
       0.490
Lspi_0072
Esterase.
  
     0.459
Lspi_1502
Acetoacetate decarboxylase.
 
     0.413
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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