lvrB3 protein (Legionella spiritensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lvrB3

Legionella vir region protein. (102 aa)

Predicted Functional Partners:

lvrA2_1

0.736

csrA_1

0.736

virB11

0.677

trbE_1

0.667

trbC_1

0.666

Lspi_1235

0.657

trbI_1

0.657

trbF_1

0.654

Lspi_1245

0.654

trbD_1

0.648

Your Current Organism:

Legionella spiritensis

NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lspi_1235	csrA_1	Lspi_1235	Lspi_1238	Putative prophage repressor CI-like protein.	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	0.459
Lspi_1235	lvrA2_1	Lspi_1235	Lspi_1236	Putative prophage repressor CI-like protein.	Vir region protein.	0.881
Lspi_1235	lvrB3	Lspi_1235	Lspi_1237	Putative prophage repressor CI-like protein.	Legionella vir region protein.	0.657
Lspi_1235	trbD_1	Lspi_1235	Lspi_1241	Putative prophage repressor CI-like protein.	Conjugal transfer protein TrbD.	0.505
Lspi_1235	trbE_1	Lspi_1235	Lspi_1242	Putative prophage repressor CI-like protein.	Conjugal transfer protein TrbE.	0.411
Lspi_1235	trbF_1	Lspi_1235	Lspi_1243	Putative prophage repressor CI-like protein.	Conjugal transfer protein TrbF.	0.472
Lspi_1235	virB11	Lspi_1235	Lspi_1239	Putative prophage repressor CI-like protein.	Conjugal transfer ATPase TrbB.	0.408
Lspi_1245	csrA_1	Lspi_1245	Lspi_1238	Conjugal transfer protein TrbH.	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	0.678
Lspi_1245	lvrA2_1	Lspi_1245	Lspi_1236	Conjugal transfer protein TrbH.	Vir region protein.	0.582
Lspi_1245	lvrB3	Lspi_1245	Lspi_1237	Conjugal transfer protein TrbH.	Legionella vir region protein.	0.654
Lspi_1245	trbC_1	Lspi_1245	Lspi_1240	Conjugal transfer protein TrbH.	Conjugal transfer protein TrbC.	0.977
Lspi_1245	trbD_1	Lspi_1245	Lspi_1241	Conjugal transfer protein TrbH.	Conjugal transfer protein TrbD.	0.977
Lspi_1245	trbE_1	Lspi_1245	Lspi_1242	Conjugal transfer protein TrbH.	Conjugal transfer protein TrbE.	0.977
Lspi_1245	trbF_1	Lspi_1245	Lspi_1243	Conjugal transfer protein TrbH.	Conjugal transfer protein TrbF.	0.977
Lspi_1245	trbI_1	Lspi_1245	Lspi_1246	Conjugal transfer protein TrbH.	Conjugal transfer protein TrbI.	0.977
Lspi_1245	virB11	Lspi_1245	Lspi_1239	Conjugal transfer protein TrbH.	Conjugal transfer ATPase TrbB.	0.975
csrA_1	Lspi_1235	Lspi_1238	Lspi_1235	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	Putative prophage repressor CI-like protein.	0.459
csrA_1	Lspi_1245	Lspi_1238	Lspi_1245	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	Conjugal transfer protein TrbH.	0.678
csrA_1	lvrA2_1	Lspi_1238	Lspi_1236	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	Vir region protein.	0.672
csrA_1	lvrB3	Lspi_1238	Lspi_1237	Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s).	Legionella vir region protein.	0.736