Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lspi_0033 | Lspi_1944 | Lspi_0033 | Lspi_1944 | O-antigen biosynthesis protein. | Polysaccharide biosynthesis protein. | 0.627 |
Lspi_0033 | capD | Lspi_0033 | Lspi_0261 | O-antigen biosynthesis protein. | Nucleoside-diphosphate sugar epimerase. | 0.745 |
Lspi_0033 | ugd | Lspi_0033 | Lspi_1060 | O-antigen biosynthesis protein. | UDP-glucose 6-dehydrogenase. | 0.416 |
Lspi_1944 | Lspi_0033 | Lspi_1944 | Lspi_0033 | Polysaccharide biosynthesis protein. | O-antigen biosynthesis protein. | 0.627 |
Lspi_1944 | Lspi_1945 | Lspi_1944 | Lspi_1945 | Polysaccharide biosynthesis protein. | Hypothetical protein. | 0.618 |
Lspi_1944 | Lspi_1947 | Lspi_1944 | Lspi_1947 | Polysaccharide biosynthesis protein. | Eukaryotic small stress protein PASS1. | 0.563 |
Lspi_1944 | capD | Lspi_1944 | Lspi_0261 | Polysaccharide biosynthesis protein. | Nucleoside-diphosphate sugar epimerase. | 0.632 |
Lspi_1944 | capL | Lspi_1944 | Lspi_1871 | Polysaccharide biosynthesis protein. | Protein capL; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. | 0.587 |
Lspi_1944 | galU | Lspi_1944 | Lspi_1059 | Polysaccharide biosynthesis protein. | Glucose-1-phosphate uridylyltransferase. | 0.648 |
Lspi_1944 | gatC | Lspi_1944 | Lspi_0969 | Polysaccharide biosynthesis protein. | glutamyl/tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.606 |
Lspi_1944 | murD_2 | Lspi_1944 | Lspi_1946 | Polysaccharide biosynthesis protein. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.565 |
Lspi_1944 | ugd | Lspi_1944 | Lspi_1060 | Polysaccharide biosynthesis protein. | UDP-glucose 6-dehydrogenase. | 0.951 |
Lspi_1944 | wecB | Lspi_1944 | Lspi_1868 | Polysaccharide biosynthesis protein. | UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. | 0.773 |
Lspi_1945 | Lspi_1944 | Lspi_1945 | Lspi_1944 | Hypothetical protein. | Polysaccharide biosynthesis protein. | 0.618 |
Lspi_1945 | Lspi_1947 | Lspi_1945 | Lspi_1947 | Hypothetical protein. | Eukaryotic small stress protein PASS1. | 0.701 |
Lspi_1945 | murD_2 | Lspi_1945 | Lspi_1946 | Hypothetical protein. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.701 |
Lspi_1947 | Lspi_1944 | Lspi_1947 | Lspi_1944 | Eukaryotic small stress protein PASS1. | Polysaccharide biosynthesis protein. | 0.563 |
Lspi_1947 | Lspi_1945 | Lspi_1947 | Lspi_1945 | Eukaryotic small stress protein PASS1. | Hypothetical protein. | 0.701 |
Lspi_1947 | murD_2 | Lspi_1947 | Lspi_1946 | Eukaryotic small stress protein PASS1. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.773 |
capD | Lspi_0033 | Lspi_0261 | Lspi_0033 | Nucleoside-diphosphate sugar epimerase. | O-antigen biosynthesis protein. | 0.745 |
page 1 of 3