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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lspi_1964FAD dependent oxidoreductase. (479 aa)    
Predicted Functional Partners:
Lspi_1963
Transporter of the major facilitator superfamily (MFS).
  
    0.783
serB
Phosphoserine phosphatase.
    
  0.761
Lspi_1965
A-factor biosynthesis hotdog domain protein.
       0.754
Lspi_2461
Ferredoxin reductase.
  
 
 0.746
Lspi_1962
Hypothetical protein.
       0.714
Lspi_1958
Polyketide synthase.
  
 
  0.705
fabG_3
3-oxoacyl-ACP reductase.
  
 
  0.694
Lspi_1125
Oxidoreductase.
  
     0.682
Lspi_1960
Hypothetical protein.
       0.672
Lspi_1957
Phosphopantetheine attachment site.
  
    0.659
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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