Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lspi_1973Hypothetical protein. (310 aa)    
Predicted Functional Partners:
Lspi_0696
Putative type I restriction-modification system (methylase S subunit).
  
    0.793
Lspi_0698
Putative type I restriction enzyme R protein.
  
    0.792
Lspi_1408
Fic/DOC family protein.
  
    0.742
Lspi_0695
Putative type I restriction enzyme M protein.
  
   0.680
Lspi_1972
Hypothetical protein.
       0.678
lpxD_2
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
   
    0.540
hisIE
Histidine biosynthesis bifunctional protein HisIE; In the N-terminal section; belongs to the PRA-CH family.
       0.491
Lspi_1974
Hypothetical protein.
       0.440
mazF
mRNA interferase MazF.
       0.440
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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