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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lspi_1997HTH-type transcriptional regulator. (217 aa)    
Predicted Functional Partners:
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.982
Lspi_1126
SOS mutagenesis and repair UmuC protein.
  
 
 0.776
umuC
DNA polymerase V, subunit C.
  
 
 0.776
Lspi_2188
Choline/ethanolamine kinase.
  
     0.762
dotC
Defect in organelle trafficking lipoprotein DotC.
 
  
 0.761
metC
Cystathionine beta-lyase.
  
 
 0.754
Lspi_2323
Hypothetical protein.
  
     0.752
Lspi_2000
Cytidine/deoxycytidylate deaminase.
  
  
 0.738
Lspi_1998
Hypothetical protein.
       0.731
Lspi_1999
Hypothetical protein.
       0.731
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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