Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lspi_2006Conjugal transfer protein TraL. (241 aa)    
Predicted Functional Partners:
traC_1
DNA primase TraC.
 
     0.792
traC_2
DNA primase TraC.
 
     0.792
traM
Conjugal transfer protein TraM.
       0.786
traK_2
TraK.
       0.786
traJ_1
Conjugal transfer relaxosome component TraJ.
 
     0.783
traJ_2
Conjugal transfer relaxosome component TraJ.
 
     0.783
traI_1
TraI protein.
 
     0.781
traI_2
TraI protein.
 
     0.781
trbD_1
Conjugal transfer protein TrbD.
 
     0.774
trbD_2
Conjugal transfer protein TrbD.
 
     0.774
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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