STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_07160RED_N domain-containing protein. (538 aa)    
Predicted Functional Partners:
TCAP_03875
Pre-mRNA-splicing factor prp1.
   
 0.961
TCAP_04729
Microfibrillar-associated protein 1.
   
  0.956
TCAP_02579
Pre-mRNA-splicing factor 38A.
   
 0.902
TCAP_04237
Uridine nucleosidase.
 
      0.899
TCAP_03301
Pre-mRNA-splicing factor cwf10.
    
 
 0.881
TCAP_04148
U1-type domain-containing protein.
   
  0.841
TCAP_05879
U4/U6.U5 small nuclear ribonucleoprotein component snu23.
    
  0.839
TCAP_03140
Pre-mRNA-splicing factor RSE1.
    
   0.818
TCAP_02882
Uncharacterized protein.
    
  0.764
TCAP_04693
Pre-mRNA-splicing factor cwf17.
    
 
 0.739
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.