TCAP_06383 protein (Tolypocladium capitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAP_06383

U3 small nucleolar RNA-associated protein 10. (1789 aa)

Predicted Functional Partners:

TCAP_07450

0.999

TCAP_06243

0.999

TCAP_06112

0.999

TCAP_05663

0.999

TCAP_04356

0.999

TCAP_04338

0.999

TCAP_04270

0.999

TCAP_04037

0.999

TCAP_03720

0.999

TCAP_03158

0.999

Your Current Organism:

Tolypocladium capitatum

NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAP_03158	TCAP_03720	A0A2K3QH70	A0A2K3QFR2	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 20.	0.997
TCAP_03158	TCAP_04037	A0A2K3QH70	A0A2K3QEQ0	U3 small nucleolar RNA-associated protein 13.	Periodic tryptophan protein 2.	0.999
TCAP_03158	TCAP_04270	A0A2K3QH70	A0A2K3QE25	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 15.	0.997
TCAP_03158	TCAP_04338	A0A2K3QH70	A0A2K3QDY2	U3 small nucleolar RNA-associated protein 13.	Ribosome biogenesis protein bms1.	0.998
TCAP_03158	TCAP_04356	A0A2K3QH70	A0A2K3QDT4	U3 small nucleolar RNA-associated protein 13.	Nucleolar protein 58.	0.998
TCAP_03158	TCAP_05663	A0A2K3QH70	A0A2K3QA20	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 22.	0.999
TCAP_03158	TCAP_06112	A0A2K3QH70	A0A2K3Q8Q8	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 4.	0.998
TCAP_03158	TCAP_06243	A0A2K3QH70	A0A2K3Q8J3	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 5.	0.996
TCAP_03158	TCAP_06383	A0A2K3QH70	A0A2K3Q821	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 10.	0.999
TCAP_03158	TCAP_07450	A0A2K3QH70	A0A2K3PXD7	U3 small nucleolar RNA-associated protein 13.	U3 small nucleolar RNA-associated protein 7.	0.998
TCAP_03720	TCAP_03158	A0A2K3QFR2	A0A2K3QH70	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 13.	0.997
TCAP_03720	TCAP_04037	A0A2K3QFR2	A0A2K3QEQ0	U3 small nucleolar RNA-associated protein 20.	Periodic tryptophan protein 2.	0.998
TCAP_03720	TCAP_04270	A0A2K3QFR2	A0A2K3QE25	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 15.	0.994
TCAP_03720	TCAP_04338	A0A2K3QFR2	A0A2K3QDY2	U3 small nucleolar RNA-associated protein 20.	Ribosome biogenesis protein bms1.	0.998
TCAP_03720	TCAP_04356	A0A2K3QFR2	A0A2K3QDT4	U3 small nucleolar RNA-associated protein 20.	Nucleolar protein 58.	0.994
TCAP_03720	TCAP_05663	A0A2K3QFR2	A0A2K3QA20	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 22.	0.998
TCAP_03720	TCAP_06112	A0A2K3QFR2	A0A2K3Q8Q8	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 4.	0.998
TCAP_03720	TCAP_06243	A0A2K3QFR2	A0A2K3Q8J3	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 5.	0.992
TCAP_03720	TCAP_06383	A0A2K3QFR2	A0A2K3Q821	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 10.	0.999
TCAP_03720	TCAP_07450	A0A2K3QFR2	A0A2K3PXD7	U3 small nucleolar RNA-associated protein 20.	U3 small nucleolar RNA-associated protein 7.	0.999

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About