STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_05502RBR-type E3 ubiquitin transferase. (652 aa)    
Predicted Functional Partners:
TCAP_04210
Ubiquitin.
    
 0.711
TCAP_07112
GPI transamidase component PIG-S.
    
 0.709
TCAP_06074
RNA polymerase I-specific transcription initiation factor rrn7.
    
  0.709
TCAP_02485
RBR-type E3 ubiquitin transferase.
    
 0.709
TCAP_03869
AN1-type domain-containing protein.
   
  0.696
TCAP_01253
Ubiquitin-like domain-containing protein.
   
  0.696
TCAP_00186
UV excision repair protein rhp23.
    
 0.635
TCAP_07467
Protein BOI2.
    
  0.632
TCAP_01792
Deubiquitination-protection protein dph1.
    
  0.632
TCAP_01429
Protein bir1.
    
 0.598
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.