STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_05405Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (974 aa)    
Predicted Functional Partners:
TCAP_05163
Pre-mRNA-processing factor 17.
   
 0.999
TCAP_03818
Pre-mRNA-splicing factor SLU7.
   
 0.997
TCAP_06294
Pre-mRNA-splicing factor CWC25.
    
 0.996
TCAP_05798
Coiled-coil domain-containing protein 94.
   
 0.996
TCAP_06437
Uncharacterized protein.
    
 
 0.989
TCAP_00406
Pre-mRNA splicing factor CEF1.
 
 
 0.989
TCAP_05398
Pre-mRNA-processing factor 19.
   
 0.988
TCAP_05269
Pre-mRNA-splicing factor cwf14.
    
 0.988
TCAP_00511
Pre-mRNA-processing-splicing factor 8.
   
 
 0.986
TCAP_01393
Pre-mRNA-splicing factor cwc22.
   
 0.983
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.