STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_04818Uncharacterized protein. (204 aa)    
Predicted Functional Partners:
TCAP_02248
Pre-mrna branch site protein p14.
    
 
 0.790
TCAP_00176
Uncharacterized protein.
    
 
 0.773
TCAP_04317
Splicing factor 3B subunit 1.
    
 
 0.733
TCAP_06078
Uncharacterized protein.
    
 
 0.554
TCAP_03140
Pre-mRNA-splicing factor RSE1.
    
 
 0.554
TCAP_00769
Matrin-type domain-containing protein.
   
 
 0.546
TCAP_07248
Splicing factor 3A subunit 1.
   
 
 0.543
TCAP_02641
Splicing factor 3B subunit 4.
    
 
 0.511
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 
 0.481
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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