STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_04134H/ACA ribonucleoprotein complex subunit 2. (238 aa)    
Predicted Functional Partners:
TCAP_06190
Centromere/microtubule-binding protein cbf5.
  
 0.999
TCAP_01404
[NU+] prion formation protein 1.
   
   0.997
TCAP_05620
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.995
TCAP_04356
Nucleolar protein 58.
   
 0.992
TCAP_04209
Nucleolar protein 56.
   
 0.992
TCAP_06573
Elongation factor 3.
   
   0.991
TCAP_05089
tRNA pseudouridine synthase 4.
  
 0.990
TCAP_06401
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
  
 0.981
TCAP_03455
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 0.979
TCAP_07470
60S ribosomal protein L5.
  
 0.976
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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