STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_03660tRNA pseudouridine(38/39) synthase. (561 aa)    
Predicted Functional Partners:
TCAP_05089
tRNA pseudouridine synthase 4.
   
 0.871
TCAP_06213
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.866
TCAP_06190
Centromere/microtubule-binding protein cbf5.
   
 0.831
TCAP_03485
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.822
TCAP_02407
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.822
TCAP_06909
Nucleolar protein NOP52 variant.
   
    0.813
TCAP_01404
[NU+] prion formation protein 1.
   
   0.797
TCAP_02177
Multisubstrate pseudouridine synthase 7.
   
 
 0.771
TCAP_02072
Nucleolar complex protein 2.
   
    0.763
TCAP_03562
Ribosome biogenesis protein RPF2.
   
    0.739
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.