TCAP_03424 protein (Tolypocladium capitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAP_03424

Uncharacterized protein. (139 aa)

Predicted Functional Partners:

TCAP_01415

0.763

TCAP_05429

0.706

TCAP_01474

0.700

TCAP_06260

0.694

TCAP_01881

0.690

TCAP_02603

0.689

TCAP_05291

0.686

TCAP_00748

0.686

TCAP_03048

0.680

TCAP_01021

0.680

Your Current Organism:

Tolypocladium capitatum

NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAP_00748	TCAP_01021	A0A2K3QP73	A0A2K3QNF5	Serine/threonine-protein kinase apg-1.	ANK_REP_REGION domain-containing protein.	0.715
TCAP_00748	TCAP_03048	A0A2K3QP73	A0A2K3QHN1	Serine/threonine-protein kinase apg-1.	ANK_REP_REGION domain-containing protein.	0.715
TCAP_00748	TCAP_03424	A0A2K3QP73	A0A2K3QGH9	Serine/threonine-protein kinase apg-1.	Uncharacterized protein.	0.686
TCAP_01021	TCAP_00748	A0A2K3QNF5	A0A2K3QP73	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein kinase apg-1.	0.715
TCAP_01021	TCAP_01415	A0A2K3QNF5	A0A2K3QMA5	ANK_REP_REGION domain-containing protein.	RanBD1 domain-containing protein.	0.469
TCAP_01021	TCAP_03048	A0A2K3QNF5	A0A2K3QHN1	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.804
TCAP_01021	TCAP_03424	A0A2K3QNF5	A0A2K3QGH9	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.680
TCAP_01021	TCAP_06260	A0A2K3QNF5	A0A2K3Q8B4	ANK_REP_REGION domain-containing protein.	Glutamyl-tRNA(Gln) amidotransferase subunit A.	0.838
TCAP_01415	TCAP_01021	A0A2K3QMA5	A0A2K3QNF5	RanBD1 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.469
TCAP_01415	TCAP_01881	A0A2K3QMA5	A0A2K3QKX6	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
TCAP_01415	TCAP_02603	A0A2K3QMA5	A0A2K3QIW2	RanBD1 domain-containing protein.	Nucleoporin.	0.999
TCAP_01415	TCAP_03048	A0A2K3QMA5	A0A2K3QHN1	RanBD1 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.469
TCAP_01415	TCAP_03424	A0A2K3QMA5	A0A2K3QGH9	RanBD1 domain-containing protein.	Uncharacterized protein.	0.763
TCAP_01415	TCAP_05291	A0A2K3QMA5	A0A2K3QB30	RanBD1 domain-containing protein.	Protein transport protein sec13; Belongs to the WD repeat SEC13 family.	0.999
TCAP_01474	TCAP_03424	A0A2K3QM56	A0A2K3QGH9	Set1 complex component ash2.	Uncharacterized protein.	0.700
TCAP_01474	TCAP_05429	A0A2K3QM56	A0A2K3QAW8	Set1 complex component ash2.	Set1 complex component swd1.	0.999
TCAP_01474	TCAP_06260	A0A2K3QM56	A0A2K3Q8B4	Set1 complex component ash2.	Glutamyl-tRNA(Gln) amidotransferase subunit A.	0.700
TCAP_01881	TCAP_01415	A0A2K3QKX6	A0A2K3QMA5	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	RanBD1 domain-containing protein.	0.999
TCAP_01881	TCAP_02603	A0A2K3QKX6	A0A2K3QIW2	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin.	0.999
TCAP_01881	TCAP_03424	A0A2K3QKX6	A0A2K3QGH9	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.690

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About