STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_03258ATP-dependent RNA helicase SUB2. (439 aa)    
Predicted Functional Partners:
TCAP_05913
mRNA export protein mlo3.
   
 0.995
TCAP_00666
THO complex subunit 4A.
   
 0.992
TCAP_00278
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
0.979
TCAP_01034
26S proteasome regulatory subunit N7.
   
 0.977
TCAP_06023
THOC5 family protein.
   
 0.976
TCAP_01393
Pre-mRNA-splicing factor cwc22.
   
 0.973
TCAP_02849
THO complex subunit 1.
   
 0.972
TCAP_03818
Pre-mRNA-splicing factor SLU7.
   
 0.968
TCAP_07344
THO complex subunit mft1.
   
 0.967
TCAP_01140
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.967
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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