STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_02882Uncharacterized protein. (842 aa)    
Predicted Functional Partners:
TCAP_03954
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
   
 0.897
TCAP_04319
Splicing factor U2AF 50 kDa subunit.
   
 
 0.884
TCAP_00698
RNA helicase.
    
 0.868
TCAP_05405
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
   
 0.859
TCAP_05663
U3 small nucleolar RNA-associated protein 22.
    
 
 0.810
TCAP_01201
U3 small nucleolar RNA-associated protein 6.
    
 
 0.804
TCAP_05792
rRNA biogenesis protein RRP36.
   
   0.801
TCAP_06924
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
   0.800
TCAP_06212
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
    
   0.800
TCAP_04649
U3 small nucleolar ribonucleoprotein IMP3.
    
   0.800
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.