STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_02450Ras guanyl-nucleotide exchange factor RasGEF. (110 aa)    
Predicted Functional Partners:
TCAP_03790
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.776
TCAP_06873
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.748
TCAP_03738
RPOL9 domain-containing protein.
    
  0.746
TCAP_05758
DNA-directed RNA polymerases II, IV and V subunit 12.
    
  0.744
TCAP_04502
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.744
TCAP_04810
Urea amidolyase.
    
 0.742
TCAP_01753
Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial.
    
 0.742
TCAP_02407
DNA-directed RNA polymerase II subunit RPB3.
    
  0.741
TCAP_00762
DNA-directed RNA polymerase II subunit RPB11.
    
  0.740
TCAP_07299
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.735
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.