STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_02011mRNA 3'-end-processing protein YTH1. (392 aa)    
Predicted Functional Partners:
TCAP_01240
Protein cft1.
   
 0.966
TCAP_06707
mRNA cleavage and polyadenylation specificity factor complex subunit pta1.
    
 0.965
TCAP_06543
Pre-mRNA polyadenylation factor FIP1.
    
 0.965
TCAP_06417
Polyadenylation factor subunit 2.
    
 0.965
TCAP_00851
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.965
TCAP_01934
RNA polymerase II subunit A C-terminal domain phosphatase.
    
 0.962
TCAP_04960
RING finger protein.
    
 0.960
TCAP_03480
Cleavage stimulation factor subunit 2.
   
 0.960
TCAP_02835
WD repeat-containing protein 82.
    
 0.957
TCAP_02310
mRNA 3'-end-processing protein RNA14.
    
 0.946
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.