STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_01528rRNA-processing protein utp23. (296 aa)    
Predicted Functional Partners:
TCAP_06924
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.996
TCAP_06243
U3 small nucleolar RNA-associated protein 5.
   
 
 0.973
TCAP_06714
U3 small nucleolar RNA-associated protein 14.
   
 
 0.967
TCAP_04712
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.964
TCAP_05517
ATP-dependent RNA helicase ROK1.
   
 0.959
TCAP_04649
U3 small nucleolar ribonucleoprotein IMP3.
   
 0.919
TCAP_01646
Nucleolar complex protein 14.
   
 
 0.915
TCAP_02408
Protein sof1.
   
  0.912
TCAP_00741
Sas10 domain-containing protein.
   
 
 0.905
TCAP_01529
Protein phosphatase; Belongs to the PP2C family.
 
    
 0.900
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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