STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_01427Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (726 aa)    
Predicted Functional Partners:
TCAP_00511
Pre-mRNA-processing-splicing factor 8.
   
 0.998
TCAP_03875
Pre-mRNA-splicing factor prp1.
   
 0.997
TCAP_03301
Pre-mRNA-splicing factor cwf10.
   
 0.997
TCAP_04693
Pre-mRNA-splicing factor cwf17.
    
 0.995
TCAP_06437
Uncharacterized protein.
   
 0.984
TCAP_02549
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.978
TCAP_01578
U4/U6.U5 tri-snRNP-associated protein snu66.
   
 0.975
TCAP_04734
Small nuclear ribonucleoprotein Sm D2.
   
 0.974
TCAP_00634
U4/U5/U6 small nuclear ribonucleoprotein prp3.
   
 0.974
TCAP_01181
Small nuclear ribonucleoprotein Sm D3.
   
 0.973
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.