STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAP_00595Tudor domain-containing protein. (279 aa)    
Predicted Functional Partners:
TCAP_04496
U2 small nuclear ribonucleoprotein A.
     
 0.965
TCAP_00485
U2 snRNP-associated SURP motif-containing protein.
    
  0.962
TCAP_04091
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 
 0.957
TCAP_07220
Splicing factor 45.
   
 
  0.953
TCAP_03954
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
   
 
  0.946
TCAP_03875
Pre-mRNA-splicing factor prp1.
    
 
 0.923
TCAP_00769
Matrin-type domain-containing protein.
    
  0.884
TCAP_04317
Splicing factor 3B subunit 1.
   
 0.834
TCAP_05649
Small nuclear ribonucleoprotein F.
    
 0.769
TCAP_02248
Pre-mrna branch site protein p14.
    
 0.758
Your Current Organism:
Tolypocladium capitatum
NCBI taxonomy Id: 45235
Other names: Clavaria capitata, Cordyceps capitata, Elaphocordyceps capitata, T. capitatum, Tolypocladium capitatum (Holmsk. : Fr.) Quandt, Kepler & Spatafora, 2014, Torrubia capitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.