STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
surA_2Periplasmic chaperone for outer membrane proteins SurA. (451 aa)    
Predicted Functional Partners:
SDW81317.1
Hypothetical protein.
       0.830
ppiB_2
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.728
ppiB_1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.728
SDW63946.1
Beta-barrel assembly machine subunit BamA.
  
 
 0.698
surA_1
Peptidyl-prolyl cis-trans isomerase D.
  
     0.695
SDW81247.1
Protein of unknown function.
 
     0.657
SDW70188.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
 
  
 0.618
SDW44505.1
Ig-like domain-containing protein.
  
    0.597
SDW40434.1
Protein of unknown function.
  
     0.573
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.568
Your Current Organism:
Capnocytophaga granulosa
NCBI taxonomy Id: 45242
Other names: ATCC 51502, C. granulosa, CCUG 32991, CIP 104128, DSM 11449, JCM 8566, LMG 16022, LMG:16022, NCTC 12948, strain B0611
Server load: low (16%) [HD]