STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mprATwo-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP. (228 aa)    
Predicted Functional Partners:
walK
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.992
qseC
Signal transduction histidine kinase.
 
 0.955
zraS
Hypothetical protein.
  
 
 0.890
phoP
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  
 
0.800
htpX
Heat shock protein. Metallo peptidase. MEROPS family M48B.
     
 0.777
SDX16151.1
Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain.
       0.773
SDX16179.1
Hypothetical protein.
       0.773
ybhF_4
ABC-2 type transport system ATP-binding protein.
       0.773
ybhR_3
ABC-2 type transport system permease protein.
       0.773
SDX16256.1
acyl-CoA thioester hydrolase.
       0.773
Your Current Organism:
Capnocytophaga granulosa
NCBI taxonomy Id: 45242
Other names: ATCC 51502, C. granulosa, CCUG 32991, CIP 104128, DSM 11449, JCM 8566, LMG 16022, LMG:16022, NCTC 12948, strain B0611
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