STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD84100.1Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
AMD84099.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.808
AMD84503.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
AMD84147.1
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
AMD84885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
AMD84069.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
AMD86141.1
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
AMD84793.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
AMD84101.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
AMD84102.1
PyrR protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
AMD85520.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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