Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD86141.1Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (840 aa)    
Predicted Functional Partners:
AMD84074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.785
AMD85755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.767
AMD84360.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
AMD84609.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
AMD85624.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.726
AMD84102.1
PyrR protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.721
AMD84100.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
AMD84101.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMD84265.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.714
AMD84311.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.713
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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