STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD84268.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (379 aa)    
Predicted Functional Partners:
AMD84269.1
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
AMD84270.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.809
AMD84685.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.551
AMD85615.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.551
AMD84238.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.544
AMD84364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.544
AMD85122.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.544
AMD84271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.538
AMD85565.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
AMD84682.1
Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.519
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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