Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD84832.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
AMD84417.1
Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.832
AMD85624.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.707
AMD84897.1
HYR domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.684
AMD84833.1
Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.583
AMD85927.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.557
AMD84831.1
Sialidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
AMD86141.1
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
AMD84074.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
AMD84585.1
Flagellin biosynthesis protein FlgD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
AMD84584.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.478
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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