STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD86199.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
AXF12_01760
ABC transporter ATP-binding protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.955
AMD84370.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.914
AMD84836.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.900
AMD85988.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.668
AMD84726.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
AMD84722.1
Dialkylrecorsinol condensing enzyme DarA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.611
AMD85308.1
Gliding motility-associated ABC transporter permease subunit GldF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.569
trmH
rRNA methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.551
AMD84723.1
3-oxoacyl-ACP synthase; FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.544
AMD84725.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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