STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMD85935.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
AMD85934.1
NGG1p interacting factor NIF3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.919
AMD85936.1
OstA-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.699
AMD85220.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
AMD85892.1
Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
AMD84932.1
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
AMD84070.1
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
AMD85668.1
Transmembrane permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
AMD85933.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
AMD84601.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
AMD84514.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
Your Current Organism:
Capnocytophaga haemolytica
NCBI taxonomy Id: 45243
Other names: ATCC 51501, C. haemolytica, CCUG 32990, CIP 104125, DSM 11385, JCM 8565, LMG 16021, LMG:16021, NCTC 12947, strain A0404
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.