STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsBRibosomal protein S2; PROSITE: PS00435, Haem peroxidase, plant/fungal/bacterial; PROFILE: PS50929, ABC transporter, transmembrane region, type 1;PS50893, ABC transporter-like; SUPERFAMILY: SSF90123, ABC transporter, transmembrane region, type 1; PFAM: PF00664, ABC transporter, transmembrane region;PF00005, ABC transporter-like; PRODOM: PD000006, ABC transporter-like; SMART: SM00382, AAA+ ATPase, core; Belongs to the universal ribosomal protein uS2 family. (313 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 0.999
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
 0.999
rpsI
Ribosomal protein S9; PANTHER: PTHR11142, tRNA pseudouridine synthase; PFAM: PF01416, tRNA pseudouridine synthase; PIR: PIRSF001430, tRNA pseudouridine synthase; GENE3D: G3DSA:3.30.70.660, tRNA pseudouridine synthase;G3DSA:3.30.70.580, tRNA pseudouridine synthase; TIGRFAMS: TIGR00071, tRNA pseudouridine synthase; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.999
rpsP
Ribosomal protein S16; SUPERFAMILY: SSF102829, Cell division protein ZapA-like; PFAM: PF05164, Cell division protein ZapA-like; Belongs to the bacterial ribosomal protein bS16 family.
  
 0.999
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.999
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
 
 0.999
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 0.999
rpsD
RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 0.999
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 0.999
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.