STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aasi_0145Hypothetical protein; PFAM: PF08529, Transcription factor NusA, N-terminal; SUPERFAMILY: SSF50249, Nucleic acid-binding, OB-fold-like;SSF54814, K Homology, prokaryotic type;SSF69705, Transcription factor NusA, N-terminal;SSF47794, DNA repair Rad51/transcription factor NusA, alpha-helical; SMART: SM00316, S1, RNA binding; GENE3D: G3DSA:2.40.50.140, Nucleic acid-binding, OB-fold;G3DSA:3.30.300.20, K homology-like, alpha/beta;G3DSA:3.30.1480.10, Transcription factor NusA, N-terminal; TIGRFAMS: TIGR01953, Transcription termination factor NusA. (58 aa)    
Predicted Functional Partners:
Aasi_0146
Hypothetical protein; PROSITE: PS01176, Initiation factor 2; PANTHER: PTHR23115:SF41, Translation initiation factor 2 related; SUPERFAMILY: SSF50447, Translation elongation and initiation factors/Ribosomal, beta-barrel; PFAM: PF04760, Translation initiation factor IF-2, N-terminal;PF03144, Translation elongation factor EFTu/EF1A, domain 2;PF00009, Protein synthesis factor, GTP-binding; TIGRFAMS: TIGR00231, Small GTP-binding protein;TIGR00487, Initiation factor 2.
       0.678
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.