STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aasi_0429PANTHER: PTHR21368, Ribosomal protein L9; PROSITE: PS00651, Ribosomal protein L9; PFAM: PF01281, Ribosomal protein L9;PF03948, Ribosomal protein L9; SUPERFAMILY: SSF55653, Ribosomal protein L9;SSF55658, Ribosomal protein L9 N-terminal-like; GENE3D: G3DSA:3.10.430.100, Ribosomal protein L9;G3DSA:3.40.5.10, Ribosomal protein L9; TIGRFAMS: TIGR00158, Ribosomal protein L9. (128 aa)    
Predicted Functional Partners:
Aasi_0430
PRINTS: PR00974, Ribosomal protein S18; PANTHER: PTHR13479, Ribosomal protein S18; PROSITE: PS00057, Ribosomal protein S18; PFAM: PF01084, Ribosomal protein S18; SUPERFAMILY: SSF46911, Ribosomal protein S18; PRODOM: PD002239, Ribosomal protein S18; GENE3D: G3DSA:4.10.640.10, Ribosomal protein S18; TIGRFAMS: TIGR00165, Ribosomal protein S18; Belongs to the pseudouridine synthase RsuA family.
       0.687
rpoC
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.651
rpoB
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.625
Aasi_1195
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.605
Aasi_0016
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PRINTS: PR00419, Adrenodoxin reductase;PR00469, Pyridine nucleotide-disulphide oxidoreductase, class-II;PR00368, FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PROSITE: PS00573, Pyridine nucleotide-disulphide oxidoreductase, class-II, active site; PFAM: PF00070, Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region;PF07992, FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRODOM: PD000139, Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; TIGRFAMS: TIGR01292, Thioredo [...]
  
     0.591
Aasi_1160
Hypothetical protein; PROSITE: PS01150, NADH dehydrogenase (ubiquinone), 20 kDa subunit; PANTHER: PTHR11995:SF2, NADH dehydrogenase (ubiquinone), 20 kDa subunit;PTHR11995, [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB; PFAM: PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit; TIGRFAMS: TIGR01957, NADH dehydrogenase (ubiquinone), 20 kDa subunit.
  
  
 0.578
Aasi_0428
Hypothetical protein.
 
     0.532
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.492
Aasi_0014
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 
 0.489
Aasi_0216
Hypothetical protein; PFAM: PF00149, Metallophosphoesterase.
  
     0.463
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.