STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Aasi_0484Hypothetical protein; PANTHER: PTHR11819, Na+/solute symporter; PROFILE: PS50283, Na+/solute symporter; PFAM: PF01966, Metal-dependent phosphohydrolase, HD region, subdomain;PF00474, Na+/solute symporter; SMART: SM00471, Metal-dependent phosphohydrolase, HD region. (223 aa)    
Predicted Functional Partners:
Aasi_0483
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
 
     0.804
Aasi_0488
Hypothetical protein; PROFILE: PS50994, Integrase, catalytic core; PFAM: PF00665, Integrase, catalytic core; SUPERFAMILY: SSF53098, Polynucleotidyl transferase, Ribonuclease H fold.
 
    0.763
Aasi_0799
Hypothetical protein; PRINTS: PR00032, Helix-turn-helix, AraC type; PROFILE: PS01124, Helix-turn-helix, AraC type; SUPERFAMILY: SSF46689, Homeodomain-like.
    
  0.588
Aasi_1160
Hypothetical protein; PROSITE: PS01150, NADH dehydrogenase (ubiquinone), 20 kDa subunit; PANTHER: PTHR11995:SF2, NADH dehydrogenase (ubiquinone), 20 kDa subunit;PTHR11995, [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB; PFAM: PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit; TIGRFAMS: TIGR01957, NADH dehydrogenase (ubiquinone), 20 kDa subunit.
  
 
 0.585
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.556
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.486
Aasi_1325
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
       0.486
Aasi_0999
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
  
 
 0.433
Aasi_1629
Hypothetical protein.
  
 
 0.433
Aasi_0797
Hypothetical protein.
  
    0.432
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.