STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDHypothetical protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (231 aa)    
Predicted Functional Partners:
Aasi_0074
Protein of unknown function DUF214; SUPERFAMILY: SSF52833, Thioredoxin-like fold; PFAM: PF00578, Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; GENE3D: G3DSA:3.40.30.10, Thioredoxin fold.
  
 0.981
Aasi_0365
Hypothetical protein.
  
 0.981
Aasi_1160
Hypothetical protein; PROSITE: PS01150, NADH dehydrogenase (ubiquinone), 20 kDa subunit; PANTHER: PTHR11995:SF2, NADH dehydrogenase (ubiquinone), 20 kDa subunit;PTHR11995, [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB; PFAM: PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit; TIGRFAMS: TIGR01957, NADH dehydrogenase (ubiquinone), 20 kDa subunit.
  
 
 0.892
Aasi_1425
Hypothetical protein.
   
 
 0.884
Aasi_0999
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
  
 
 0.675
Aasi_1629
Hypothetical protein.
  
 
 0.675
Aasi_0202
PROSITE: PS00474, Ribosomal protein L3; PFAM: PF00297, Ribosomal protein L3; SUPERFAMILY: SSF50447, Translation elongation and initiation factors/Ribosomal, beta-barrel; PRODOM: PD001374, Ribosomal protein L3; Belongs to the ABC transporter superfamily.
 
 
   
0.665
Aasi_0211
Hypothetical protein; PFAM: PF00496, Bacterial extracellular solute-binding protein, family 5.
 
 
   
0.665
Aasi_1325
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
  
 
 0.638
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
 0.626
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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