STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aasi_0919Hypothetical protein; PROFILE: PS50165, Excinuclease ABC, C subunit, C-terminal;PS50164, Excinuclease ABC, C subunit, N-terminal; PFAM: PF08459, Excinuclease ABC, C subunit, C-terminal;PF01541, Excinuclease ABC, C subunit, N-terminal; SUPERFAMILY: SSF47781, RuvA domain 2-like;SSF46600, UvrB, C-terminal UvrC-binding;SSF82771, Excinuclease ABC, C subunit, N-terminal; PRODOM: PD005870, Excinuclease ABC, C subunit, C-terminal; SMART: SM00465, Excinuclease ABC, C subunit, N-terminal; TIGRFAMS: TIGR00194, Excinuclease ABC, C subunit. (214 aa)    
Predicted Functional Partners:
Aasi_0918
Hypothetical protein; SUPERFAMILY: SSF53686, Pyridoxal phosphate-dependent enzyme, beta subunit; Belongs to the UPF0176 family.
       0.732
Aasi_0589
PROSITE: PS00323, Ribosomal protein S19/S15; PFAM: PF08238, Sel1-like; GENE3D: G3DSA:1.25.40.10, Tetratricopeptide-like helical; SMART: SM00671, Sel1-like.
      0.701
Aasi_1160
Hypothetical protein; PROSITE: PS01150, NADH dehydrogenase (ubiquinone), 20 kDa subunit; PANTHER: PTHR11995:SF2, NADH dehydrogenase (ubiquinone), 20 kDa subunit;PTHR11995, [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB; PFAM: PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit; TIGRFAMS: TIGR01957, NADH dehydrogenase (ubiquinone), 20 kDa subunit.
  
  
 0.588
Aasi_0999
Hypothetical protein; PFAM: PF01609, Transposase, IS4-like.
  
  
 0.575
Aasi_1629
Hypothetical protein.
  
  
 0.575
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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