G9NKM4_HYPAI protein (Trichoderma atroviride)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G9NKM4_HYPAI

Carbohydrate-binding module family 13 protein. (820 aa)

Predicted Functional Partners:

G9P1D3_HYPAI

0.509

G9P7E5_HYPAI

0.509

G9NQM6_HYPAI

0.454

G9P740_HYPAI

0.454

G9NS42_HYPAI

0.435

G9NY90_HYPAI

0.435

G9P112_HYPAI

0.435

G9NSL5_HYPAI

0.412

G9P2W3_HYPAI

0.400

Your Current Organism:

Trichoderma atroviride

NCBI taxonomy Id: 452589
Other names: T. atroviride IMI 206040, Trichoderma atroviride IMI 206040

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9NKM4_HYPAI	G9NQM6_HYPAI	G9NKM4	G9NQM6	Carbohydrate-binding module family 13 protein.	Uncharacterized protein.	0.454
G9NKM4_HYPAI	G9NS42_HYPAI	G9NKM4	G9NS42	Carbohydrate-binding module family 13 protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.435
G9NKM4_HYPAI	G9NSL5_HYPAI	G9NKM4	G9NSL5	Carbohydrate-binding module family 13 protein.	RPOLD domain-containing protein.	0.412
G9NKM4_HYPAI	G9NY90_HYPAI	G9NKM4	G9NY90	Carbohydrate-binding module family 13 protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.435
G9NKM4_HYPAI	G9P112_HYPAI	G9NKM4	G9P112	Carbohydrate-binding module family 13 protein.	Uncharacterized protein.	0.435
G9NKM4_HYPAI	G9P1D3_HYPAI	G9NKM4	G9P1D3	Carbohydrate-binding module family 13 protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.509
G9NKM4_HYPAI	G9P2W3_HYPAI	G9NKM4	G9P2W3	Carbohydrate-binding module family 13 protein.	RPOL4c domain-containing protein.	0.400
G9NKM4_HYPAI	G9P740_HYPAI	G9NKM4	G9P740	Carbohydrate-binding module family 13 protein.	Uncharacterized protein.	0.454
G9NKM4_HYPAI	G9P7E5_HYPAI	G9NKM4	G9P7E5	Carbohydrate-binding module family 13 protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.509
G9NQM6_HYPAI	G9NKM4_HYPAI	G9NQM6	G9NKM4	Uncharacterized protein.	Carbohydrate-binding module family 13 protein.	0.454
G9NQM6_HYPAI	G9P1D3_HYPAI	G9NQM6	G9P1D3	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.955
G9NQM6_HYPAI	G9P740_HYPAI	G9NQM6	G9P740	Uncharacterized protein.	Uncharacterized protein.	0.981
G9NQM6_HYPAI	G9P7E5_HYPAI	G9NQM6	G9P7E5	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.955
G9NS42_HYPAI	G9NKM4_HYPAI	G9NS42	G9NKM4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Carbohydrate-binding module family 13 protein.	0.435
G9NS42_HYPAI	G9NSL5_HYPAI	G9NS42	G9NSL5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOLD domain-containing protein.	0.999
G9NS42_HYPAI	G9NY90_HYPAI	G9NS42	G9NY90	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
G9NS42_HYPAI	G9P112_HYPAI	G9NS42	G9P112	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
G9NS42_HYPAI	G9P2W3_HYPAI	G9NS42	G9P2W3	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RPOL4c domain-containing protein.	0.999
G9NSL5_HYPAI	G9NKM4_HYPAI	G9NSL5	G9NKM4	RPOLD domain-containing protein.	Carbohydrate-binding module family 13 protein.	0.412
G9NSL5_HYPAI	G9NS42_HYPAI	G9NSL5	G9NS42	RPOLD domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999