G9P523_HYPAI protein (Trichoderma atroviride)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G9P523_HYPAI

ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (689 aa)

Predicted Functional Partners:

G9P2M2_HYPAI

0.999

G9NLE6_HYPAI

0.984

G9P2M1_HYPAI

0.982

G9NEN6_HYPAI

0.981

G9NWY7_HYPAI

0.971

G9P960_HYPAI

0.968

G9NZA8_HYPAI

0.937

G9NZJ4_HYPAI

0.937

G9P8P3_HYPAI

0.933

G9NNA9_HYPAI

0.928

Your Current Organism:

Trichoderma atroviride

NCBI taxonomy Id: 452589
Other names: T. atroviride IMI 206040, Trichoderma atroviride IMI 206040

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9NEN6_HYPAI	G9NLE6_HYPAI	G9NEN6	G9NLE6	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA ligase.	0.840
G9NEN6_HYPAI	G9NNA9_HYPAI	G9NEN6	G9NNA9	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA ligase.	0.764
G9NEN6_HYPAI	G9NWY7_HYPAI	G9NEN6	G9NWY7	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Lactamase_B domain-containing protein.	0.815
G9NEN6_HYPAI	G9NZA8_HYPAI	G9NEN6	G9NZA8	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.735
G9NEN6_HYPAI	G9NZJ4_HYPAI	G9NEN6	G9NZJ4	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	HRDC domain-containing protein.	0.735
G9NEN6_HYPAI	G9P2M1_HYPAI	G9NEN6	G9P2M1	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Zn(2)-C6 fungal-type domain-containing protein.	0.959
G9NEN6_HYPAI	G9P2M2_HYPAI	G9NEN6	G9P2M2	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	SAP domain-containing protein.	0.974
G9NEN6_HYPAI	G9P523_HYPAI	G9NEN6	G9P523	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.981
G9NEN6_HYPAI	G9P8P3_HYPAI	G9NEN6	G9P8P3	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.833
G9NEN6_HYPAI	G9P960_HYPAI	G9NEN6	G9P960	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA_LIGASE_A3 domain-containing protein.	0.781
G9NLE6_HYPAI	G9NEN6_HYPAI	G9NLE6	G9NEN6	DNA ligase.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.840
G9NLE6_HYPAI	G9NNA9_HYPAI	G9NLE6	G9NNA9	DNA ligase.	DNA ligase.	0.653
G9NLE6_HYPAI	G9NWY7_HYPAI	G9NLE6	G9NWY7	DNA ligase.	Lactamase_B domain-containing protein.	0.889
G9NLE6_HYPAI	G9NZA8_HYPAI	G9NLE6	G9NZA8	DNA ligase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.817
G9NLE6_HYPAI	G9NZJ4_HYPAI	G9NLE6	G9NZJ4	DNA ligase.	HRDC domain-containing protein.	0.817
G9NLE6_HYPAI	G9P2M1_HYPAI	G9NLE6	G9P2M1	DNA ligase.	Zn(2)-C6 fungal-type domain-containing protein.	0.965
G9NLE6_HYPAI	G9P2M2_HYPAI	G9NLE6	G9P2M2	DNA ligase.	SAP domain-containing protein.	0.980
G9NLE6_HYPAI	G9P523_HYPAI	G9NLE6	G9P523	DNA ligase.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.984
G9NLE6_HYPAI	G9P8P3_HYPAI	G9NLE6	G9P8P3	DNA ligase.	Uncharacterized protein.	0.789
G9NNA9_HYPAI	G9NEN6_HYPAI	G9NNA9	G9NEN6	DNA ligase.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.764