STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0026PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: xcb:XC_3208 inosine-uridine preferring nucleoside hydrolase. (334 aa)    
Predicted Functional Partners:
Oter_4343
SMART: regulatory protein LacI; KEGG: sma:SAV6288 LacI-family transcriptional regulator.
 
   
 0.614
Oter_2220
PFAM: Endoribonuclease L-PSP; KEGG: ppd:Ppro_0804 endoribonuclease L-PSP.
 
   0.609
Oter_3234
PFAM: TonB-dependent receptor plug; KEGG: ana:all2610 ferrichrome-iron receptor.
  
     0.507
Oter_2894
PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein.
  
     0.501
Oter_3131
KEGG: sus:Acid_7007 hypothetical protein.
  
    0.489
Oter_2901
PFAM: TonB-dependent receptor plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
  
     0.488
Oter_0025
PFAM: outer membrane efflux protein; KEGG: pca:Pcar_2126 conserved putative outer membrane protein.
 
     0.481
Oter_2928
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.478
Oter_3831
PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: gme:Gmet_3268 metal dependent phosphohydrolase.
  
     0.454
Oter_0974
KEGG: rba:RB9146 hypothetical protein.
 
     0.436
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.