STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0040KEGG: scl:sce7336 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Oter_2133
KEGG: bma:BMAA0059 hypothetical protein.
  
     0.582
Oter_0066
PFAM: cyclase/dehydrase; KEGG: ava:Ava_4497 streptomyces cyclase/dehydrase.
  
    0.578
Oter_3620
KEGG: scl:sce3053 glycosyltransferase.
  
     0.538
Oter_0038
Multi-sensor signal transduction histidine kinase; KEGG: scl:sce5100 two-component hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.535
Oter_0039
PFAM: response regulator receiver; KEGG: eba:ebA6392 response regulator.
       0.535
Oter_4147
KEGG: mes:Meso_0331 hypothetical protein.
  
     0.519
Oter_1140
KEGG: mex:Mext_1974 putative DNA topoisomerase I.
 
     0.497
Oter_1106
KEGG: cya:CYA_1097 trehalose synthase/putative maltokinase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
    0.470
Oter_1136
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bra:BRADO3946 putative sensor histidine kinase with a GAF domain and multiple HAMP and response regulator receiver domains (modular protein).
  
     0.435
Oter_0036
PFAM: protein of unknown function DUF892; KEGG: dge:Dgeo_1026 protein of unknown function DUF892.
 
    0.434
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.