STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0068Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: sus:Acid_2196 signal transduction histidine kinase, LytS. (366 aa)    
Predicted Functional Partners:
Oter_0067
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 0.906
Oter_2423
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pla:Plav_1850 multi-sensor hybrid histidine kinase.
 
      0.887
Oter_4069
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: afw:Anae109_2452 histidine kinase.
 
      0.855
Oter_2329
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aba:Acid345_0420 transcriptional regulator, LytR/AlgR family.
 
 0.837
Oter_0704
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 0.836
Oter_0979
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2726 LytTr DNA-binding domain family.
 
 0.836
Oter_1114
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2726 LytTr DNA-binding domain family.
 
 0.836
Oter_1527
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_0416 two-component system, regulatory protein.
 
 0.836
Oter_2328
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aba:Acid345_3291 transcriptional regulator, LytR/AlgR family.
 
 0.836
Oter_3913
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 0.836
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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