STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0113PFAM: glutaredoxin; KEGG: cbf:CLI_1338 rubredoxin. (87 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.803
Oter_0531
KEGG: aeh:Mlg_2308 hypothetical protein.
  
  
 0.738
Oter_0112
PFAM: protein of unknown function DUF1328; KEGG: pha:PSHAa0537 hypothetical protein.
       0.613
Oter_2645
KEGG: saz:Sama_0725 hypothetical protein.
  
     0.490
Oter_0114
PFAM: oxidoreductase domain protein; KEGG: rrs:RoseRS_1636 oxidoreductase domain protein.
       0.438
Oter_2652
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: mgm:Mmc1_0535 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
  
 0.437
Oter_4552
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nme:NMB1381 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
  
  
 0.437
Oter_0851
PFAM: biotin/lipoate A/B protein ligase; KEGG: rba:RB7583 lipoate protein ligase.
  
     0.416
Oter_3491
PFAM: protein of unknown function DUF490; KEGG: sus:Acid_3947 protein of unknown function DUF490.
  
     0.408
Oter_0115
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7006 xylose isomerase domain protein TIM barrel.
       0.407
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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