STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0305PFAM: Radical SAM domain protein; KEGG: gvi:gll0887 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Oter_0301
PFAM: Methyltransferase type 11; KEGG: ter:Tery_1991 methyltransferase type 11.
   
 0.983
Oter_0304
PFAM: glycosyl transferase family 2; KEGG: syf:Synpcc7942_1173 hypothetical protein.
 
     0.953
Oter_1590
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1428 arsenite S-adenosylmethyltransferase.
   
 0.852
Oter_0307
PFAM: protein of unknown function DUF547; KEGG: amr:AM1_5173 hypothetical protein.
 
     0.730
Oter_0303
PFAM: phosphate transporter; KEGG: ava:Ava_3798 phosphate transporter.
     
 0.723
Oter_0299
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bvi:Bcep1808_0025 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.669
Oter_0300
Hypothetical protein.
       0.668
Oter_0302
PFAM: protein of unknown function DUF1223; KEGG: hch:HCH_00871 uncharacterized secreted protein.
       0.668
Oter_0308
PFAM: SNARE associated Golgi protein; KEGG: ter:Tery_1993 hypothetical protein.
 
   
 0.644
Oter_0306
PFAM: glycosyl transferase family 2; KEGG: amr:AM1_5172 glycosyl transferase, group 2 family protein.
 
   
 0.542
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.