STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0308PFAM: SNARE associated Golgi protein; KEGG: ter:Tery_1993 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Oter_0309
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: gur:Gura_3749 mercuric reductase.
     0.991
Oter_0307
PFAM: protein of unknown function DUF547; KEGG: amr:AM1_5173 hypothetical protein.
     0.977
Oter_2746
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sgo:SGO_0368 mercury(II) reductase.
      0.879
Oter_2712
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: chu:CHU_1086 dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase).
      0.861
Oter_4192
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: bbt:BBta_0398 dihydrolipoamide dehydrogenase.
      0.814
Oter_0304
PFAM: glycosyl transferase family 2; KEGG: syf:Synpcc7942_1173 hypothetical protein.
 
     0.788
Oter_0305
PFAM: Radical SAM domain protein; KEGG: gvi:gll0887 hypothetical protein.
 
   
 0.644
Oter_0306
PFAM: glycosyl transferase family 2; KEGG: amr:AM1_5172 glycosyl transferase, group 2 family protein.
       0.579
Oter_0301
PFAM: Methyltransferase type 11; KEGG: ter:Tery_1991 methyltransferase type 11.
 
     0.512
Oter_1977
PFAM: Rhodanese domain protein; KEGG: rxy:Rxyl_2352 thiosulfate sulfurtransferase.
    0.447
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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