Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Oter_0066 | Oter_0378 | PFAM: cyclase/dehydrase; KEGG: ava:Ava_4497 streptomyces cyclase/dehydrase. | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | 0.765 |
Oter_0377 | Oter_0378 | SMART: Integrin alpha beta-propellor repeat protein; KEGG: rca:Rcas_0423 integrin alpha beta-propellor repeat protein. | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | 0.535 |
Oter_0378 | Oter_0066 | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | PFAM: cyclase/dehydrase; KEGG: ava:Ava_4497 streptomyces cyclase/dehydrase. | 0.765 |
Oter_0378 | Oter_0377 | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | SMART: Integrin alpha beta-propellor repeat protein; KEGG: rca:Rcas_0423 integrin alpha beta-propellor repeat protein. | 0.535 |
Oter_0378 | Oter_0379 | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1666 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein. | 0.433 |
Oter_0379 | Oter_0378 | PAS/PAC sensor signal transduction histidine kinase; KEGG: rpd:RPD_1666 ATP-binding region, ATPase-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein. | Hypothetical protein; KEGG: sus:Acid_2996 cyclase/dehydrase. | 0.433 |