STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0385TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: vco:VC0395_0327 tonB1 protein. (112 aa)    
Predicted Functional Partners:
Oter_0866
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmr:Mmar10_2735 TonB-dependent receptor.
 
 
 0.920
Oter_2345
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amr:AM1_B0121 biopolymer transport protein ExbD/TolR, putative.
 
 
 0.722
Oter_0384
PFAM: chemotaxis sensory transducer; KEGG: sus:Acid_1069 methyl-accepting chemotaxis sensory transducer.
       0.663
Oter_0242
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pcu:pc1547 putative biopolymer transport protein ExbB.
 
 
 0.617
Oter_2346
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ava:Ava_2305 biopolymer transport protein ExbD/TolR.
 
 
 0.604
Oter_3906
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A2483 putative biopolymer transport ExbB-like transmembrane protein.
 
 
 0.598
Oter_3905
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mca:MCA0632 biopolymer transport protein, ExbD/TolR family.
 
 
 0.595
Oter_3324
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nar:Saro_1015 biopolymer transport protein ExbD/TolR.
 
 
 0.593
Oter_4202
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.573
Oter_2362
PFAM: TonB-dependent receptor plug; KEGG: shn:Shewana3_1558 TonB-dependent receptor.
 
 
 
 0.557
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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