STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0402RNA polymerase, sigma 28 subunit, FliA/WhiG; KEGG: ctl:CTLon_0312 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2. (262 aa)    
Predicted Functional Partners:
Oter_0426
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: aoe:Clos_1477 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.956
Oter_0391
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein FlgK.
 
  
 0.951
Oter_0411
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: pth:PTH_2060 flagellum motor switch protein.
 
  
 0.949
Oter_0401
PFAM: MotA/TolQ/ExbB proton channel; KEGG: maq:Maqu_2779 flagellar motor component.
 
  
 0.946
Oter_0414
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gtn:GTNG_1080 flagellar hook protein.
 
  
 0.946
Oter_0423
PFAM: flagellar motor switch protein FliG; KEGG: tma:TM0220 flagellar motor switch protein G.
 
  
 0.945
Oter_0412
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: lbl:LBL_1356 endoflagellar motor switch protein.
 
 
 0.944
Oter_1049
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: kra:Krad_1625 RNA polymerase, sigma 28 subunit, FliA/WhiG.
  
  
 
0.927
Oter_0424
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.925
Oter_0441
PFAM: flagellar protein FliS; KEGG: gtn:GTNG_3053 flagellar protein.
 
  
 0.925
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.