STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0460Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: swo:Swol_1403 putative signal transduction protein. (280 aa)    
Predicted Functional Partners:
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.685
Oter_3831
PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: gme:Gmet_3268 metal dependent phosphohydrolase.
  
     0.684
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.670
Oter_0430
PFAM: response regulator receiver; KEGG: bte:BTH_I0615 response regulator.
 
     0.575
Oter_0462
PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_3231 putative signal transduction protein.
 
    
0.542
Oter_0461
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU2601 TPR domain/SEC-C motif domain protein.
       0.510
Oter_0402
RNA polymerase, sigma 28 subunit, FliA/WhiG; KEGG: ctl:CTLon_0312 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2.
 
     0.505
Oter_0397
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mgm:Mmc1_3100 flagellar basal-body rod protein FlgG.
 
    0.457
Oter_0458
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:glr4308 hypothetical protein.
       0.411
Oter_0459
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ava:Ava_2388 glycosyl transferase, family 2.
       0.411
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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