STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0536Hypothetical protein; KEGG: hha:Hhal_2259 lipopolysaccharide kinase. (146 aa)    
Predicted Functional Partners:
Oter_0537
PFAM: conserved hypothetical protein; KEGG: scl:sce2124 hypothetical protein.
       0.773
Oter_0538
KEGG: scl:sce2125 hypothetical protein.
       0.773
Oter_0539
PFAM: conserved hypothetical protein; KEGG: scl:sce2126 hypothetical protein.
       0.773
Oter_0540
PFAM: conserved hypothetical protein; KEGG: scl:sce2127 hypothetical protein.
       0.773
Oter_0535
KEGG: gme:Gmet_2799 hypothetical protein.
       0.655
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.