STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0575PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sbm:Shew185_2566 cobyrinic acid ac-diamide synthase. (277 aa)    
Predicted Functional Partners:
Oter_2844
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: afw:Anae109_4501 ParB-like partition protein; Belongs to the ParB family.
 
 0.956
Oter_3727
KEGG: mxa:MXAN_2517 hypothetical protein.
  
 
 0.669
Oter_1667
PFAM: cell divisionFtsK/SpoIIIE; KEGG: gur:Gura_4392 cell divisionFtsK/SpoIIIE.
  
  
 0.629
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.587
Oter_0576
KEGG: mem:Memar_1326 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein.
       0.556
Oter_0570
PFAM: Polyprenyl synthetase; KEGG: esa:ESA_00347 hypothetical protein; Belongs to the FPP/GGPP synthase family.
     
 0.462
Oter_0569
PFAM: YceI family protein; KEGG: bxe:Bxe_A3996 hypothetical protein; Belongs to the UPF0312 family.
       0.459
Oter_0571
PFAM: protein of unknown function DUF214; KEGG: mth:MTH695 hypothetical protein.
       0.459
Oter_0572
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1760 lipoprotein releasing system, ATP-binding protein.
       0.459
Oter_0573
Hypothetical protein; KEGG: rme:Rmet_4322 cytochrome c oxidase, subunit I.
       0.459
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.